Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Attr | Not Available | Not Available | Positive | 3323966 - 3323979 | Not Available |
| molecular chaperone osmy | YDC107_RS16405 | Not Available | Positive | 3325897 - 3326502 | 21074.8 |
| Putative regulatory protein | YDC107_RS16410 | Not Available | Positive | 3326629 - 3326790 | 5536.27 |
| Attl | Not Available | Not Available | Positive | 4633719 - 4633730 | Not Available |
| Integrase | YDC107_RS22490 | Not Available | Negative | 4633819 - 4634937 | 42709.5 |
| excisionase | YDC107_RS22495 | Not Available | Negative | 4634906 - 4635175 | 10185.4 |
| Exodeoxyribonuclease viii | YDC107_RS22500 | Not Available | Negative | 4635237 - 4637675 | 90352.9 |
| duf1482 family protein | YDC107_RS22505 | Not Available | Negative | 4637768 - 4637956 | 6729.17 |
| cell division inhibition protein dicb | YDC107_RS22510 | Not Available | Negative | 4637953 - 4638141 | 7078.48 |
| Hypothetical protein | YDC107_RS22520 | Not Available | Negative | 4638682 - 4639056 | 14107.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





