Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease p protein component | YDC107_RS12335 | Not Available | Positive | 2508402 - 2508761 | 13790.0 |
| membrane protein insertion efficiency factor yidd | YDC107_RS12340 | Not Available | Positive | 2508725 - 2508982 | 9381.61 |
| membrane protein insertase yidc | YDC107_RS12345 | Not Available | Positive | 2508985 - 2510631 | 61543.5 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | YDC107_RS12350 | Not Available | Positive | 2510737 - 2512101 | 49199.8 |
| shet2/espl2 family type iii secretion system effector toxin | YDC107_RS12355 | Not Available | Negative | 2512250 - 2514409 | 81869.0 |
| tryptophanase leader peptide | YDC107_RS12360 | Not Available | Positive | 2514809 - 2514883 | 2894.56 |
| tryptophanase | YDC107_RS12365 | Not Available | Positive | 2515104 - 2516519 | 52776.4 |
| low affinity tryptophan permease tnab | YDC107_RS12370 | Not Available | Positive | 2516611 - 2517858 | 45241.3 |
| multidrug efflux mfs transporter mdtl | YDC107_RS12375 | Not Available | Positive | 2517994 - 2519169 | 41508.2 |
| hth-type transcriptional regulator yidz | YDC107_RS12380 | Not Available | Positive | 2519144 - 2520103 | 36900.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





