Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-galactonate utilization transcriptional regulator dgor | YDC107_RS12285 | Not Available | Negative | 2498382 - 2499071 | 26113.1 |
| hypothetical protein | YDC107_RS12290 | Not Available | Positive | 2499349 - 2500005 | 24063.8 |
| sugar-phosphatase | YDC107_RS12295 | Not Available | Negative | 2500049 - 2500861 | 29722.8 |
| yidb family protein | YDC107_RS12300 | Not Available | Negative | 2500976 - 2501374 | 13787.4 |
| dna topoisomerase (atp-hydrolyzing) subunit b | YDC107_RS12305 | Not Available | Negative | 2501614 - 2504028 | 89941.0 |
| dna replication/repair protein recf | YDC107_RS12310 | Not Available | Negative | 2504057 - 2505130 | 40516.4 |
| dna polymerase iii subunit beta | YDC107_RS12315 | Not Available | Negative | 2505130 - 2506230 | 40589.1 |
| chromosomal replication initiator protein dnaa | YDC107_RS12320 | Not Available | Negative | 2506235 - 2507638 | 52553.7 |
| hypothetical protein | YDC107_RS12325 | Not Available | Positive | 2507935 - 2508015 | 3130.75 |
| 50s ribosomal protein l34 | YDC107_RS12330 | Not Available | Positive | 2508245 - 2508385 | 5380.74 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





