Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug efflux mfs transporter emrd | YDC107_RS12185 | Not Available | Positive | 2477869 - 2479053 | 42227.5 |
| radical sam protein | YDC107_RS12190 | Not Available | Negative | 2479061 - 2479558 | 19146.0 |
| duf202 domain-containing protein | YDC107_RS12195 | Not Available | Negative | 2479555 - 2479917 | 13769.1 |
| yidh family protein | YDC107_RS12200 | Not Available | Negative | 2479907 - 2480254 | 12780.1 |
| sulfatase-like hydrolase/transferase | YDC107_RS12205 | Not Available | Negative | 2480314 - 2481807 | 57360.4 |
| solute:sodium symporter family transporter | YDC107_RS12210 | Not Available | Negative | 2481804 - 2483519 | 62084.7 |
| helix-turn-helix transcriptional regulator | YDC107_RS12215 | Not Available | Positive | 2483686 - 2484579 | 34003.8 |
| 6-phospho-alpha-glucosidase | YDC107_RS12220 | Not Available | Negative | 2484576 - 2485898 | 49327.0 |
| pts sugar transporter subunit iib | YDC107_RS12225 | Not Available | Negative | 2485898 - 2487514 | 58349.2 |
| gntr family transcriptional regulator | YDC107_RS12230 | Not Available | Positive | 2487810 - 2488526 | 27329.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





