Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter family glucose-6-phosphate receptor uhpc | YDC107_RS12140 | Not Available | Negative | 2467863 - 2469182 | 48217.3 |
| signal transduction histidine-protein kinase/phosphatase uhpb | YDC107_RS12145 | Not Available | Negative | 2469192 - 2470694 | 56291.4 |
| transcriptional regulator uhpa | YDC107_RS12150 | Not Available | Negative | 2470694 - 2471284 | 20890.6 |
| hypothetical protein | YDC107_RS12155 | Not Available | Negative | 2471446 - 2472909 | 54823.0 |
| hypothetical protein | YDC107_RS12160 | Not Available | Negative | 2473189 - 2473671 | 17805.0 |
| acetolactate synthase small subunit | YDC107_RS12165 | Not Available | Negative | 2474749 - 2475039 | 11106.4 |
| acetolactate synthase large subunit | YDC107_RS12170 | Not Available | Negative | 2475043 - 2476731 | 60394.1 |
| ilvb operon leader peptide ivbl | YDC107_RS12175 | Not Available | Negative | 2476837 - 2476935 | 3206.11 |
| type i toxin-antitoxin system toxin tisb | YDC107_RS12180 | Not Available | Positive | 2477500 - 2477589 | 3195.29 |
| protein ysde | YDC107_RS28070 | Not Available | Negative | 2477713 - 2477787 | 2827.45 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





