Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ipad/sipd/sspd family type iii secretion system needle tip protein | YDC107_RS12085 | Not Available | Positive | 2445272 - 2446621 | 50052.5 |
| hila family transcriptional regulator eila | YDC107_RS12090 | Not Available | Positive | 2446824 - 2448521 | 63953.0 |
| inverse autotransporter adhesin eaex/air | YDC107_RS12095 | Not Available | Negative | 2448573 - 2459993 | 395313.0 |
| purine ribonucleoside efflux pump nepi | YDC107_RS12100 | Not Available | Negative | 2460195 - 2461379 | 41657.3 |
| type ii toxin-antitoxin system rele/pare family toxin | YDC107_RS12110 | Not Available | Positive | 2461613 - 2461966 | 13456.2 |
| helix-turn-helix domain-containing protein | YDC107_RS12115 | Not Available | Positive | 2461950 - 2462273 | 11639.2 |
| duf1198 domain-containing protein | YDC107_RS12120 | Not Available | Negative | 2462389 - 2462841 | 17220.1 |
| adenine permease adeq | YDC107_RS12125 | Not Available | Negative | 2462894 - 2464228 | 46998.6 |
| adenine deaminase | YDC107_RS12130 | Not Available | Positive | 2464403 - 2466169 | 63690.1 |
| hexose-6-phosphate:phosphate antiporter | YDC107_RS12135 | Not Available | Negative | 2466216 - 2467607 | 50609.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





