Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts sugar transporter subunit iia | YDC107_RS11980 | Not Available | Negative | 2422652 - 2423122 | 17383.7 |
| bglg family transcription antiterminator | YDC107_RS11985 | Not Available | Negative | 2423149 - 2424702 | 59033.2 |
| alpha-xylosidase | YDC107_RS11995 | Not Available | Negative | 2424997 - 2427315 | 88001.9 |
| glycoside-pentoside-hexuronide family transporter | YDC107_RS12000 | Not Available | Negative | 2427325 - 2428707 | 50998.5 |
| Trna-sec(p) | Not Available | Not Available | Positive | 2429000 - 2429094 | Not Available |
| tyrosine-type recombinase/integrase | YDC107_RS12010 | Not Available | Positive | 2429394 - 2430578 | 45450.2 |
| tetratricopeptide repeat protein | YDC107_RS12015 | Not Available | Positive | 2430989 - 2432032 | 40224.6 |
| hypothetical protein | YDC107_RS28755 | Not Available | Positive | 2432175 - 2432405 | 8327.36 |
| laci family dna-binding transcriptional regulator | YDC107_RS12025 | Not Available | Negative | 2432430 - 2433500 | 40039.8 |
| mfs transporter | YDC107_RS12030 | Not Available | Positive | 2433762 - 2435063 | 47751.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





