Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Tail fiber protein | YDC107_RS16350 | Not Available | Positive | 3317367 - 3319742 | 82900.9 |
| Hypothetical protein | YDC107_RS16355 | Not Available | Positive | 3319742 - 3320023 | 10737.6 |
| Tail fiber protein | YDC107_RS16360 | Not Available | Positive | 3320033 - 3321073 | 38064.5 |
| Hypothetical protein | YDC107_RS16365 | Not Available | Positive | 3321116 - 3321409 | 10929.4 |
| Qin prophage | YDC107_RS16370 | Not Available | Positive | 3321429 - 3321539 | 4184.9 |
| Recombinase family protein | YDC107_RS16375 | Not Available | Negative | 3321637 - 3322227 | 21909.8 |
| Hypothetical protein | YDC107_RS16385 | Not Available | Negative | 3322608 - 3322841 | 8732.64 |
| ynam/ynft family protein | YDC107_RS16390 | Not Available | Negative | 3322910 - 3323023 | 4000.01 |
| Hypothetical protein | YDC107_RS16395 | Not Available | Negative | 3323450 - 3323698 | 9392.14 |
| peptide chain release factor 3 | YDC107_RS16400 | Not Available | Positive | 3323918 - 3325504 | 59331.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





