Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide core heptosyltransferase rfaq | YDC107_RS11830 | Not Available | Negative | 2392749 - 2393807 | 39476.9 |
| lipid iv(a) 3-deoxy-d-manno-octulosonic acid transferase | YDC107_RS11835 | Not Available | Positive | 2394220 - 2395497 | 47293.9 |
| pantetheine-phosphate adenylyltransferase | YDC107_RS11840 | Not Available | Positive | 2395505 - 2395984 | 17837.7 |
| bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyase | YDC107_RS11845 | Not Available | Negative | 2396023 - 2396832 | 30319.8 |
| 50s ribosomal protein l33 | YDC107_RS11850 | Not Available | Negative | 2396930 - 2397097 | 6371.94 |
| 50s ribosomal protein l28 | YDC107_RS11855 | Not Available | Negative | 2397118 - 2397354 | 9007.02 |
| radc family protein | YDC107_RS11860 | Not Available | Negative | 2397571 - 2398239 | 25306.0 |
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | YDC107_RS11865 | Not Available | Positive | 2398411 - 2399631 | 43466.7 |
| dutp diphosphatase | YDC107_RS11870 | Not Available | Positive | 2399609 - 2400067 | 16288.7 |
| nucleoid occlusion factor slma | YDC107_RS11875 | Not Available | Positive | 2400174 - 2400770 | 22837.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





