Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | YDC107_RS11580 | Not Available | Negative | 2336670 - 2337485 | 31515.1 |
| mfs transporter | YDC107_RS11585 | Not Available | Positive | 2337711 - 2339111 | 51484.0 |
| glycoside hydrolase family 127 protein | YDC107_RS11590 | Not Available | Positive | 2339122 - 2341092 | 74965.8 |
| mipa/ompv family protein | YDC107_RS11595 | Not Available | Negative | 2341222 - 2341962 | 27370.9 |
| lysr family transcriptional regulator | YDC107_RS11600 | Not Available | Positive | 2342086 - 2343060 | 37374.6 |
| hlyd family secretion protein | YDC107_RS11605 | Not Available | Negative | 2343057 - 2344193 | 41759.5 |
| duf3302 domain-containing protein | YDC107_RS11610 | Not Available | Negative | 2344199 - 2344522 | 12404.2 |
| hypothetical protein | YDC107_RS28060 | Not Available | Positive | 2344704 - 2344847 | 5444.03 |
| aldehyde dehydrogenase aldb | YDC107_RS11620 | Not Available | Negative | 2345066 - 2346604 | 56339.5 |
| l-threonine dehydrogenase | YDC107_RS11625 | Not Available | Negative | 2346805 - 2347956 | 40351.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





