Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iclr family transcriptional regulator yiaj | YDC107_RS11530 | Not Available | Negative | 2327540 - 2328388 | 31083.5 |
| 3-dehydro-l-gulonate 2-dehydrogenase | YDC107_RS11535 | Not Available | Positive | 2328590 - 2329588 | 36574.9 |
| yhch/yjgk/yial family protein | YDC107_RS11540 | Not Available | Positive | 2329600 - 2330067 | 17395.9 |
| 2,3-diketo-l-gulonate trap transporter small permease yiam | YDC107_RS11545 | Not Available | Positive | 2330185 - 2330658 | 17516.9 |
| 2,3-diketo-l-gulonate trap transporter large permease yian | YDC107_RS11550 | Not Available | Positive | 2330661 - 2331938 | 45385.0 |
| 2,3-diketo-l-gulonate trap transporter substrate-binding protein yiao | YDC107_RS11555 | Not Available | Positive | 2331951 - 2332937 | 35972.1 |
| l-xylulokinase | YDC107_RS11560 | Not Available | Positive | 2332941 - 2334437 | 55039.8 |
| 3-keto-l-gulonate-6-phosphate decarboxylase ulad | YDC107_RS11565 | Not Available | Positive | 2334434 - 2335096 | 23663.4 |
| l-ribulose-5-phosphate 3-epimerase | YDC107_RS11570 | Not Available | Positive | 2335089 - 2335949 | 32484.9 |
| l-ribulose-5-phosphate 4-epimerase | YDC107_RS11575 | Not Available | Positive | 2335943 - 2336638 | 25613.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





