Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i toxin-antitoxin system toxin ldr family protein | YDC107_RS11325 | Not Available | Negative | 2285751 - 2285858 | 3882.93 |
| aromatic amino acid transport family protein | YDC107_RS11335 | Not Available | Positive | 2286334 - 2287605 | 47333.4 |
| dipeptide abc transporter atp-binding subunit dppf | YDC107_RS11340 | Not Available | Negative | 2287635 - 2288639 | 37516.6 |
| dipeptide abc transporter atp-binding protein | YDC107_RS11345 | Not Available | Negative | 2288636 - 2289619 | 35862.5 |
| dipeptide abc transporter permease dppc | YDC107_RS11350 | Not Available | Negative | 2289630 - 2290532 | 32310.5 |
| dipeptide abc transporter permease dppb | YDC107_RS11355 | Not Available | Negative | 2290542 - 2291561 | 37499.4 |
| dipeptide abc transporter substrate-binding protein dppa | YDC107_RS11365 | Not Available | Negative | 2291712 - 2293319 | 60280.8 |
| Ncrna_class:other | Not Available | Not Available | Positive | 2293948 - 2294083 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 2294116 - 2294192 | Not Available |
| kdo(2)-lipid a phosphoethanolamine 7''-transferase | YDC107_RS11380 | Not Available | Negative | 2294284 - 2295975 | 63836.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





