Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | YDC107_RS11215 | Not Available | Positive | 2257638 - 2258537 | 33373.7 |
| inner membrane protein yhjd | YDC107_RS11220 | Not Available | Positive | 2258586 - 2259599 | 37961.6 |
| mfs transporter | YDC107_RS11225 | Not Available | Positive | 2259991 - 2261313 | 47210.9 |
| asma family protein | YDC107_RS11230 | Not Available | Negative | 2261486 - 2263546 | 74435.7 |
| cyclic-guanylate-specific phosphodiesterase | YDC107_RS11235 | Not Available | Negative | 2263616 - 2264383 | 29633.9 |
| 2-dehydro-3-deoxygluconokinase | YDC107_RS11240 | Not Available | Positive | 2264615 - 2265544 | 33963.2 |
| m16 family metallopeptidase | YDC107_RS11245 | Not Available | Negative | 2265640 - 2267136 | 55589.6 |
| c4-dicarboxylate transporter dctc | YDC107_RS11250 | Not Available | Negative | 2267356 - 2268642 | 45439.2 |
| biofilm formation regulator hmsp | YDC107_RS11255 | Not Available | Negative | 2268825 - 2270813 | 74457.8 |
| cellulose synthase complex outer membrane protein bcsc | YDC107_RS11260 | Not Available | Negative | 2270895 - 2273978 | 113415.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





