Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acid resistance transcriptional activator gade | YDC107_RS11165 | Not Available | Positive | 2243598 - 2244125 | 20600.6 |
| hypothetical protein | YDC107_RS11170 | Not Available | Negative | 2244126 - 2244404 | 9835.86 |
| multidrug transporter subunit mdte | YDC107_RS11175 | Not Available | Positive | 2244512 - 2245621 | 39379.5 |
| multidrug efflux pump rnd permease mdtf | YDC107_RS11180 | Not Available | Positive | 2245646 - 2248759 | 111554.0 |
| acid resistance transcriptional activator gadw | YDC107_RS11185 | Not Available | Negative | 2249122 - 2249850 | 28016.1 |
| acid resistance transcriptional activator gadx | YDC107_RS11190 | Not Available | Negative | 2250219 - 2251043 | 31354.4 |
| glutamate decarboxylase | YDC107_RS11195 | Not Available | Negative | 2251403 - 2252803 | 52701.0 |
| cytochrome c peroxidase | YDC107_RS11200 | Not Available | Negative | 2253014 - 2254411 | 51555.3 |
| alpha,alpha-trehalase | YDC107_RS11205 | Not Available | Positive | 2254816 - 2256465 | 63746.1 |
| helix-turn-helix transcriptional regulator | YDC107_RS11210 | Not Available | Negative | 2256516 - 2257118 | 22575.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





