Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heme abc transporter substrate-binding protein shut | YDC107_RS11115 | Not Available | Positive | 2235226 - 2236140 | 32823.9 |
| heme anaerobic degradation radical sam methyltransferase chuw/hutw | YDC107_RS11120 | Not Available | Positive | 2236160 - 2237497 | 49630.2 |
| heme utilization cystosolic carrier protein hutx | YDC107_RS11125 | Not Available | Positive | 2237510 - 2238004 | 18274.8 |
| anaerobilin reductase | YDC107_RS11130 | Not Available | Positive | 2238004 - 2238627 | 21849.1 |
| heme abc transporter permease shuu/chuu | YDC107_RS11135 | Not Available | Positive | 2238676 - 2239668 | 35349.8 |
| heme abc transporter atp-binding protein | YDC107_RS11140 | Not Available | Positive | 2239665 - 2240435 | 28855.9 |
| mgtc/sapb family protein | YDC107_RS11145 | Not Available | Negative | 2240487 - 2241134 | 23214.9 |
| acid-activated periplasmic chaperone hdeb | YDC107_RS11150 | Not Available | Negative | 2241198 - 2241524 | 12043.5 |
| acid-activated periplasmic chaperone hdea | YDC107_RS11155 | Not Available | Negative | 2241640 - 2241972 | 11858.2 |
| acid-resistance protein hded | YDC107_RS11160 | Not Available | Positive | 2242227 - 2242799 | 20890.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





