Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inorganic phosphate transporter pita | YDC107_RS11015 | Not Available | Positive | 2213746 - 2215245 | 53392.4 |
| universal stress protein uspb | YDC107_RS11020 | Not Available | Negative | 2215316 - 2215651 | 13028.1 |
| universal stress protein uspa | YDC107_RS11025 | Not Available | Positive | 2216042 - 2216476 | 16067.3 |
| protein yrib | YDC107_RS28050 | Not Available | Negative | 2216573 - 2216626 | 1904.39 |
| dipeptide/tripeptide permease dtpb | YDC107_RS11030 | Not Available | Positive | 2216792 - 2218261 | 53560.4 |
| 16s rrna (guanine(1516)-n(2))-methyltransferase rsmj | YDC107_RS11035 | Not Available | Negative | 2218310 - 2219062 | 26935.8 |
| oligopeptidase a | YDC107_RS11040 | Not Available | Negative | 2219070 - 2221112 | 77171.3 |
| 23s rrna (adenine(2030)-n(6))-methyltransferase | YDC107_RS11045 | Not Available | Positive | 2221315 - 2222157 | 31973.5 |
| glutathione-disulfide reductase | YDC107_RS11050 | Not Available | Positive | 2222229 - 2223581 | 48741.3 |
| damage-inducible type i toxin dinq | YDC107_RS11055 | Not Available | Negative | 2223635 - 2223718 | 3021.06 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





