Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| branched chain amino acid abc transporter substrate-binding protein livj | YDC107_RS10810 | Not Available | Negative | 2169884 - 2170987 | 39078.5 |
| rna polymerase sigma factor rpoh | YDC107_RS10815 | Not Available | Negative | 2171259 - 2172113 | 32470.6 |
| permease-like cell division protein ftsx | YDC107_RS10820 | Not Available | Negative | 2172358 - 2173416 | 38545.9 |
| cell division atp-binding protein ftse | YDC107_RS10825 | Not Available | Negative | 2173409 - 2174077 | 24440.8 |
| signal recognition particle-docking protein ftsy | YDC107_RS10830 | Not Available | Negative | 2174080 - 2175576 | 54652.4 |
| 16s rrna (guanine(966)-n(2))-methyltransferase | YDC107_RS10835 | Not Available | Positive | 2175726 - 2176322 | 21719.9 |
| duf1145 family protein | YDC107_RS10840 | Not Available | Positive | 2176312 - 2176581 | 10280.4 |
| duf2500 domain-containing protein | YDC107_RS10845 | Not Available | Negative | 2176584 - 2176943 | 13529.4 |
| lysoplasmalogenase | YDC107_RS10850 | Not Available | Positive | 2177084 - 2177710 | 23791.9 |
| zn(ii)/cd(ii)/pb(ii) translocating p-type atpase znta | YDC107_RS10855 | Not Available | Positive | 2177784 - 2179982 | 76722.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





