Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sn-glycerol 3-phosphate abc transporter atp binding protein ugpc | YDC107_RS10760 | Not Available | Negative | 2159428 - 2160498 | 39573.4 |
| sn-glycerol-3-phosphate abc transporter permease ugpe | YDC107_RS10765 | Not Available | Negative | 2160500 - 2161345 | 31499.6 |
| sn-glycerol-3-phosphate abc transporter permease ugpa | YDC107_RS10770 | Not Available | Negative | 2161342 - 2162229 | 33265.6 |
| sn-glycerol-3-phosphate abc transporter substrate-binding protein ugpb | YDC107_RS10775 | Not Available | Negative | 2162327 - 2163643 | 48481.3 |
| high-affinity branched-chain amino acid abc transporter atp-binding protein livf | YDC107_RS10780 | Not Available | Negative | 2164041 - 2164754 | 26268.8 |
| high-affinity branched-chain amino acid abc transporter atp-binding protein livg | YDC107_RS10785 | Not Available | Negative | 2164756 - 2165523 | 28428.7 |
| branched chain amino acid abc transporter permease livm | YDC107_RS10790 | Not Available | Negative | 2165520 - 2166797 | 46273.2 |
| high-affinity branched-chain amino acid abc transporter permease livh | YDC107_RS10795 | Not Available | Negative | 2166794 - 2167720 | 32966.4 |
| high-affinity branched-chain amino acid abc transporter substrate-binding protein livk | YDC107_RS10800 | Not Available | Negative | 2167768 - 2168877 | 39376.9 |
| aspartate 1-decarboxylase autocleavage activator panm | YDC107_RS10805 | Not Available | Positive | 2169301 - 2169684 | 14577.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





