Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycogen phosphorylase | YDC107_RS10660 | Not Available | Negative | 2136230 - 2138677 | 93131.6 |
| glycogen synthase glga | YDC107_RS10665 | Not Available | Negative | 2138696 - 2140129 | 52825.4 |
| glucose-1-phosphate adenylyltransferase | YDC107_RS10670 | Not Available | Negative | 2140129 - 2141424 | 48700.4 |
| glycogen debranching protein glgx | YDC107_RS10675 | Not Available | Negative | 2141442 - 2143415 | 73608.6 |
| 1,4-alpha-glucan branching enzyme | YDC107_RS10680 | Not Available | Negative | 2143412 - 2145598 | 84359.5 |
| aspartate-semialdehyde dehydrogenase | YDC107_RS10685 | Not Available | Negative | 2145871 - 2146974 | 40020.2 |
| naat family transporter yhgn | YDC107_RS10690 | Not Available | Positive | 2147166 - 2147759 | 21491.9 |
| gluconate transporter | YDC107_RS10695 | Not Available | Negative | 2147816 - 2149156 | 46418.9 |
| gluconokinase | YDC107_RS10700 | Not Available | Negative | 2149160 - 2149687 | 19544.4 |
| gluconate operon transcriptional repressor gntr | YDC107_RS10705 | Not Available | Negative | 2149826 - 2150821 | 36424.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





