Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitrite reductase small subunit nird | YDC107_RS10360 | Not Available | Positive | 2070559 - 2070885 | 12270.6 |
| nitrite transporter nirc | YDC107_RS10365 | Not Available | Positive | 2071011 - 2071817 | 28578.2 |
| siroheme synthase cysg | YDC107_RS10370 | Not Available | Positive | 2071836 - 2073209 | 49954.4 |
| yhfl family protein | YDC107_RS10375 | Not Available | Positive | 2073456 - 2073623 | 5819.16 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | YDC107_RS10380 | Not Available | Negative | 2073730 - 2074815 | 38626.9 |
| yhft family protein | YDC107_RS10385 | Not Available | Negative | 2074827 - 2076131 | 46495.2 |
| duf2620 domain-containing protein | YDC107_RS10390 | Not Available | Negative | 2076143 - 2076496 | 12479.5 |
| phosphotriesterase-related protein | YDC107_RS10395 | Not Available | Negative | 2076507 - 2077385 | 32825.3 |
| phosphopentomutase | YDC107_RS10400 | Not Available | Negative | 2077382 - 2078608 | 44623.3 |
| yhfx family plp-dependent enzyme | YDC107_RS10405 | Not Available | Negative | 2078609 - 2079772 | 42309.8 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





