Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| osmc family protein | YDC107_RS10305 | Not Available | Negative | 2059422 - 2059826 | 14517.6 |
| camp-activated global transcriptional regulator crp | YDC107_RS10310 | Not Available | Positive | 2060128 - 2060760 | 23641.9 |
| yccs/yhfk family putative transporter | YDC107_RS10315 | Not Available | Positive | 2060811 - 2062901 | 79503.7 |
| bifunctional acetylornithine/succinyldiaminopimelate transaminase | YDC107_RS10320 | Not Available | Negative | 2062968 - 2064188 | 43783.5 |
| aminodeoxychorismate synthase component 2 | YDC107_RS10325 | Not Available | Negative | 2064274 - 2064837 | 20704.1 |
| putative adenosine monophosphate-protein transferase fic | YDC107_RS10330 | Not Available | Negative | 2064869 - 2065471 | 22961.4 |
| yhfg family protein | YDC107_RS10335 | Not Available | Negative | 2065461 - 2065628 | 6668.12 |
| peptidylprolyl isomerase a | YDC107_RS10340 | Not Available | Negative | 2065733 - 2066305 | 20432.5 |
| mfs transporter tsga | YDC107_RS10345 | Not Available | Positive | 2066576 - 2067757 | 43125.0 |
| nadph-nitrite reductase large subunit | YDC107_RS10355 | Not Available | Positive | 2068019 - 2070562 | 93112.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





