Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s5 | YDC107_RS10105 | Not Available | Negative | 2033839 - 2034342 | 17604.5 |
| 50s ribosomal protein l18 | YDC107_RS10110 | Not Available | Negative | 2034357 - 2034710 | 12770.4 |
| 50s ribosomal protein l6 | YDC107_RS10115 | Not Available | Negative | 2034720 - 2035253 | 18918.9 |
| 30s ribosomal protein s8 | YDC107_RS10120 | Not Available | Negative | 2035266 - 2035658 | 14127.4 |
| 30s ribosomal protein s14 | YDC107_RS10125 | Not Available | Negative | 2035692 - 2035997 | 11581.1 |
| 50s ribosomal protein l5 | YDC107_RS10130 | Not Available | Negative | 2036012 - 2036551 | 20302.7 |
| 50s ribosomal protein l24 | YDC107_RS10135 | Not Available | Negative | 2036566 - 2036880 | 11316.9 |
| 50s ribosomal protein l14 | YDC107_RS10140 | Not Available | Negative | 2036891 - 2037262 | 13541.9 |
| 30s ribosomal protein s17 | YDC107_RS10145 | Not Available | Negative | 2037427 - 2037681 | 9705.01 |
| 50s ribosomal protein l29 | YDC107_RS10150 | Not Available | Negative | 2037681 - 2037872 | 7273.91 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





