Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1992 domain-containing protein | YDC107_RS10055 | Not Available | Negative | 2028254 - 2028622 | 13972.6 |
| 50s ribosomal protein l17 | YDC107_RS10060 | Not Available | Negative | 2028729 - 2029112 | 14365.4 |
| dna-directed rna polymerase subunit alpha | YDC107_RS10065 | Not Available | Negative | 2029153 - 2030142 | 36513.9 |
| 30s ribosomal protein s4 | YDC107_RS10070 | Not Available | Negative | 2030168 - 2030788 | 23470.5 |
| 30s ribosomal protein s11 | YDC107_RS10075 | Not Available | Negative | 2030822 - 2031211 | 13845.7 |
| 30s ribosomal protein s13 | YDC107_RS10080 | Not Available | Negative | 2031228 - 2031584 | 13100.2 |
| 50s ribosomal protein l36 | YDC107_RS10085 | Not Available | Negative | 2031731 - 2031847 | 4364.59 |
| preprotein translocase subunit secy | YDC107_RS10090 | Not Available | Negative | 2031879 - 2033210 | 48514.7 |
| 50s ribosomal protein l15 | YDC107_RS10095 | Not Available | Negative | 2033218 - 2033652 | 14967.4 |
| 50s ribosomal protein l30 | YDC107_RS10100 | Not Available | Negative | 2033656 - 2033835 | 6542.23 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





