Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2556 family protein | YDC107_RS09905 | Not Available | Positive | 2001723 - 2001902 | 7203.93 |
| multidrug efflux transporter transcriptional repressor acrs | YDC107_RS09910 | Not Available | Negative | 2001905 - 2002567 | 25200.7 |
| multidrug efflux rnd transporter periplasmic adaptor subunit acre | YDC107_RS09915 | Not Available | Positive | 2002966 - 2004123 | 41308.0 |
| multidrug efflux rnd transporter permease subunit acrf | YDC107_RS09920 | Not Available | Positive | 2004135 - 2007239 | 111430.0 |
| membrane protein | YDC107_RS09925 | Not Available | Positive | 2007492 - 2007713 | 7452.14 |
| amino acid abc transporter substrate-binding protein | YDC107_RS09930 | Not Available | Positive | 2008144 - 2009169 | 37034.8 |
| amino acid abc transporter permease | YDC107_RS09935 | Not Available | Positive | 2009237 - 2010418 | 43236.9 |
| amino acid abc transporter permease | YDC107_RS09940 | Not Available | Positive | 2010428 - 2011531 | 41470.7 |
| amino acid abc transporter atp-binding protein | YDC107_RS09945 | Not Available | Positive | 2011539 - 2012297 | 28555.0 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 2012528 - 2012643 | Not Available |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





