Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnase e specificity factor csrd | YDC107_RS09855 | Not Available | Negative | 1990494 - 1992434 | 73387.8 |
| mdr family oxidoreductase | YDC107_RS09860 | Not Available | Positive | 1992586 - 1993560 | 34679.8 |
| acetyl-coa carboxylase biotin carboxyl carrier protein | YDC107_RS09865 | Not Available | Positive | 1994538 - 1995008 | 16688.2 |
| acetyl-coa carboxylase biotin carboxylase subunit | YDC107_RS09870 | Not Available | Positive | 1995019 - 1996368 | 49323.7 |
| yhdt family protein | YDC107_RS09875 | Not Available | Positive | 1996477 - 1996719 | 9108.28 |
| sodium/pantothenate symporter | YDC107_RS09880 | Not Available | Positive | 1996709 - 1998160 | 51745.4 |
| 50s ribosomal protein l11 methyltransferase | YDC107_RS09885 | Not Available | Positive | 1998172 - 1999053 | 31878.8 |
| trna dihydrouridine synthase dusb | YDC107_RS09890 | Not Available | Positive | 1999382 - 2000347 | 35868.2 |
| dna-binding transcriptional regulator fis | YDC107_RS09895 | Not Available | Positive | 2000373 - 2000669 | 11240.6 |
| adenine-specific dna-methyltransferase | YDC107_RS09900 | Not Available | Positive | 2000755 - 2001639 | 33376.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





