Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| p-hydroxybenzoic acid efflux pump subunit aaea | YDC107_RS09805 | Not Available | Negative | 1977576 - 1978508 | 34762.5 |
| p-hydroxybenzoic acid efflux pump operon protein aaex | YDC107_RS09810 | Not Available | Negative | 1978516 - 1978719 | 7847.01 |
| hth-type transcriptional activator aaer | YDC107_RS09815 | Not Available | Positive | 1978902 - 1979831 | 34518.1 |
| metalloprotease tldd | YDC107_RS09820 | Not Available | Negative | 1979959 - 1981404 | 51367.2 |
| asma2 domain-containing protein yhdp | YDC107_RS09825 | Not Available | Negative | 1981560 - 1985360 | 139000.0 |
| ribonuclease g | YDC107_RS09830 | Not Available | Negative | 1985428 - 1986897 | 55367.4 |
| nucleoside triphosphate pyrophosphatase yhde | YDC107_RS09835 | Not Available | Negative | 1986887 - 1987480 | 21469.6 |
| rod shape-determining protein mred | YDC107_RS09840 | Not Available | Negative | 1987489 - 1987977 | 18788.9 |
| rod shape-determining protein mrec | YDC107_RS09845 | Not Available | Negative | 1987977 - 1989080 | 39532.8 |
| rod shape-determining protein mreb | YDC107_RS09850 | Not Available | Negative | 1989146 - 1990189 | 36954.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





