Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylneuraminate anomerase | YDC107_RS09700 | Not Available | Negative | 1958395 - 1958859 | 17050.6 |
| n-acetylmannosamine kinase | YDC107_RS09705 | Not Available | Negative | 1958856 - 1959731 | 29624.6 |
| n-acetylmannosamine-6-phosphate 2-epimerase | YDC107_RS09710 | Not Available | Negative | 1959728 - 1960417 | 24075.0 |
| sialic acid transporter nant | YDC107_RS09715 | Not Available | Negative | 1960465 - 1961955 | 53681.6 |
| n-acetylneuraminate lyase | YDC107_RS09720 | Not Available | Negative | 1962064 - 1962957 | 32595.4 |
| transcriptional regulator nanr | YDC107_RS09725 | Not Available | Negative | 1963079 - 1963870 | 29496.0 |
| anaerobic c4-dicarboxylate transporter dcuc | YDC107_RS09730 | Not Available | Positive | 1964250 - 1965617 | 48803.9 |
| clpxp protease specificity-enhancing factor | YDC107_RS09735 | Not Available | Negative | 1965661 - 1966158 | 18233.4 |
| stringent starvation protein sspa | YDC107_RS09740 | Not Available | Negative | 1966164 - 1966802 | 24306.3 |
| 30s ribosomal protein s9 | YDC107_RS09750 | Not Available | Negative | 1967197 - 1967589 | 14857.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





