Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l27 | YDC107_RS09550 | Not Available | Negative | 1929286 - 1929543 | 9125.01 |
| 50s ribosomal protein l21 | YDC107_RS09555 | Not Available | Negative | 1929564 - 1929875 | 11565.0 |
| octaprenyl diphosphate synthase | YDC107_RS09560 | Not Available | Positive | 1930134 - 1931105 | 35192.1 |
| dna-binding transcriptional regulator sfsb | YDC107_RS09565 | Not Available | Positive | 1931333 - 1931611 | 10509.6 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | YDC107_RS09570 | Not Available | Negative | 1931659 - 1932918 | 44820.4 |
| bola family iron metabolism protein ibag | YDC107_RS09575 | Not Available | Negative | 1932973 - 1933227 | 9452.29 |
| lipid asymmetry maintenance protein mlab | YDC107_RS09580 | Not Available | Negative | 1933387 - 1933680 | 10681.0 |
| phospholipid-binding protein mlac | YDC107_RS09585 | Not Available | Negative | 1933680 - 1934315 | 23964.0 |
| outer membrane lipid asymmetry maintenance protein mlad | YDC107_RS09590 | Not Available | Negative | 1934334 - 1934885 | 19577.3 |
| lipid asymmetry maintenance abc transporter permease subunit mlae | YDC107_RS09595 | Not Available | Negative | 1934890 - 1935672 | 27865.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





