Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gnat family n-acetyltransferase | YDC107_RS09400 | Not Available | Negative | 1896832 - 1897335 | 18481.8 |
| ubiquinone anaerobic biosynthesis accessory factor ubit | YDC107_RS09405 | Not Available | Negative | 1897329 - 1897853 | 19644.9 |
| ubiquinone anaerobic biosynthesis protein ubiu | YDC107_RS09410 | Not Available | Positive | 1898062 - 1899057 | 37049.2 |
| u32 family peptidase | YDC107_RS09415 | Not Available | Positive | 1899066 - 1899944 | 32567.1 |
| luciferase-like monooxygenase | YDC107_RS09420 | Not Available | Positive | 1900025 - 1901032 | 37157.5 |
| tryptophan permease | YDC107_RS09425 | Not Available | Negative | 1901150 - 1902394 | 44381.3 |
| atp-dependent rna helicase dead | YDC107_RS09430 | Not Available | Negative | 1902548 - 1904437 | 70550.5 |
| protein yrbn | YDC107_RS09435 | Not Available | Negative | 1904430 - 1904510 | 2979.59 |
| lipoprotein nlpi | YDC107_RS09440 | Not Available | Negative | 1904617 - 1905501 | 33622.5 |
| polyribonucleotide nucleotidyltransferase | YDC107_RS09445 | Not Available | Negative | 1905610 - 1907745 | 77119.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





