Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (cytidine(1402)-2'-o)-methyltransferase | YDC107_RS09350 | Not Available | Negative | 1889051 - 1889914 | 31464.8 |
| penicillin-binding protein activator lpoa | YDC107_RS09355 | Not Available | Positive | 1889979 - 1892015 | 72841.2 |
| yran family protein | YDC107_RS09360 | Not Available | Positive | 1891973 - 1892368 | 14814.5 |
| dnaa initiator-associating protein diaa | YDC107_RS09365 | Not Available | Positive | 1892388 - 1892978 | 21091.4 |
| division/outer membrane stress-associated lipid-binding lipoprotein | YDC107_RS09370 | Not Available | Positive | 1892988 - 1893563 | 20010.1 |
| permease | YDC107_RS09375 | Not Available | Negative | 1893676 - 1894716 | 37249.9 |
| nad(p)h-binding protein | YDC107_RS09380 | Not Available | Negative | 1894789 - 1895424 | 23197.3 |
| protein/nucleic acid deglycase | YDC107_RS09385 | Not Available | Positive | 1895552 - 1896070 | 18845.4 |
| yhbp family protein | YDC107_RS09390 | Not Available | Negative | 1896050 - 1896493 | 16796.2 |
| dna damage response exodeoxyribonuclease yhbq | YDC107_RS09395 | Not Available | Positive | 1896543 - 1896845 | 11242.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





