Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts n-acetylgalactosamine transporter subunit iic | YDC107_RS09300 | Not Available | Positive | 1880360 - 1881139 | 27350.5 |
| pts n-acetylgalactosamine transporter subunit iid | YDC107_RS09305 | Not Available | Positive | 1881129 - 1882007 | 31786.6 |
| pts galactosamine/n-acetylgalactosamine transporter subunit iia | YDC107_RS09310 | Not Available | Positive | 1882025 - 1882459 | 15513.7 |
| n-acetylglucosamine-6-phosphate deacetylase | YDC107_RS09315 | Not Available | Positive | 1882456 - 1883589 | 40385.8 |
| agas family sugar isomerase | YDC107_RS09320 | Not Available | Positive | 1883940 - 1885094 | 41870.9 |
| tagatose-bisphosphate aldolase subunit kbay | YDC107_RS09325 | Not Available | Positive | 1885107 - 1885967 | 31295.4 |
| pts galactosamine transporter subunit iib | YDC107_RS09330 | Not Available | Positive | 1886134 - 1886610 | 17609.3 |
| pts galactosamine transporter subunit iic | YDC107_RS09335 | Not Available | Positive | 1886649 - 1887452 | 28646.5 |
| pts galactosamine transporter subunit iid | YDC107_RS09340 | Not Available | Positive | 1887442 - 1888233 | 28976.1 |
| galactosamine-6-phosphate isomerase | YDC107_RS09345 | Not Available | Positive | 1888234 - 1889001 | 28451.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





