Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucuronate isomerase | YDC107_RS09105 | Not Available | Negative | 1843223 - 1844635 | 53990.1 |
| hexuronate transporter exut | YDC107_RS09110 | Not Available | Positive | 1845118 - 1846416 | 46909.0 |
| transcriptional regulator exur | YDC107_RS09115 | Not Available | Positive | 1846546 - 1847322 | 29821.3 |
| hypothetical protein | YDC107_RS28020 | Not Available | Positive | 1847562 - 1847645 | 3277.06 |
| deda family general envelope maintenance protein yqja | YDC107_RS09120 | Not Available | Positive | 1847667 - 1848329 | 24587.0 |
| envz/ompr regulon moderator mzra | YDC107_RS09125 | Not Available | Positive | 1848333 - 1848716 | 14173.0 |
| duf1090 family protein yqjc | YDC107_RS09130 | Not Available | Positive | 1848863 - 1849231 | 13936.5 |
| duf883 family protein | YDC107_RS09135 | Not Available | Positive | 1849269 - 1849574 | 11052.1 |
| phage holin family protein | YDC107_RS09140 | Not Available | Positive | 1849577 - 1849981 | 15148.0 |
| yqjk-like family protein | YDC107_RS09145 | Not Available | Positive | 1849971 - 1850270 | 11795.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





