Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadph-dependent ferric chelate reductase nfef | YDC107_RS09000 | Not Available | Negative | 1816599 - 1817363 | 28874.0 |
| dna-binding transcriptional regulator nfer | YDC107_RS09010 | Not Available | Positive | 1817640 - 1818263 | 23416.7 |
| aerotaxis sensor receptor aer | YDC107_RS09015 | Not Available | Negative | 1818370 - 1819890 | 55116.1 |
| putrescine aminotransferase | YDC107_RS09020 | Not Available | Positive | 1820308 - 1821687 | 49607.2 |
| pp_01742 | YDC107_RS09025 | Not Available | Negative | 1821729 - 1822061 | Not Available |
| transcriptional regulator ebgr | YDC107_RS09030 | Not Available | Positive | 1822280 - 1823263 | 36242.5 |
| beta-galactosidase subunit alpha | YDC107_RS09035 | Not Available | Positive | 1823447 - 1826539 | 117801.0 |
| beta-galactosidase subunit beta | YDC107_RS09040 | Not Available | Positive | 1826536 - 1826985 | 17500.6 |
| amino acid permease | YDC107_RS09045 | Not Available | Positive | 1827048 - 1828481 | 52175.7 |
| protein ygjj | YDC107_RS09050 | Not Available | Positive | 1828615 - 1829685 | 40159.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





