Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-tartrate utilization transcriptional activator ttdr | YDC107_RS08950 | Not Available | Negative | 1806195 - 1807127 | 35358.7 |
| l(+)-tartrate dehydratase subunit alpha | YDC107_RS08955 | Not Available | Positive | 1807334 - 1808245 | 32722.4 |
| l(+)-tartrate dehydratase subunit beta | YDC107_RS08960 | Not Available | Positive | 1808242 - 1808847 | 22680.8 |
| l-tartrate/succinate antiporter | YDC107_RS08965 | Not Available | Positive | 1808896 - 1810359 | 52969.6 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsad | YDC107_RS08970 | Not Available | Negative | 1810402 - 1811415 | 36010.5 |
| 30s ribosomal protein s21 | YDC107_RS08975 | Not Available | Positive | 1811653 - 1811868 | 8500.42 |
| dna primase | YDC107_RS08980 | Not Available | Positive | 1811979 - 1813724 | 65567.5 |
| rna polymerase sigma factor rpod | YDC107_RS08985 | Not Available | Positive | 1813919 - 1815760 | 70211.2 |
| g/u mismatch-specific dna glycosylase | YDC107_RS08990 | Not Available | Negative | 1815839 - 1816345 | 18674.5 |
| Trna-met | Not Available | Not Available | Positive | 1816470 - 1816545 | Not Available |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





