Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i toxin-antitoxin system ibs family toxin | YDC107_RS08900 | Not Available | Positive | 1795736 - 1795795 | 2150.99 |
| type i toxin-antitoxin system toxin ibse | YDC107_RS08905 | Not Available | Positive | 1796111 - 1796170 | 2207.06 |
| bifunctional d-glycero-beta-d-manno-heptose-7-phosphate kinase/d-glycero-beta-d-manno-heptose 1-phosphate adenylyltransferase hlde | YDC107_RS08910 | Not Available | Negative | 1796290 - 1797723 | 51053.6 |
| bifunctional | YDC107_RS08915 | Not Available | Negative | 1797771 - 1800611 | 108425.0 |
| inorganic triphosphatase | YDC107_RS08920 | Not Available | Negative | 1800634 - 1801935 | 48528.8 |
| tigr04211 family sh3 domain-containing protein | YDC107_RS08925 | Not Available | Positive | 1802177 - 1802797 | 23077.7 |
| fused trna nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/phosphatase cca | YDC107_RS08930 | Not Available | Positive | 1802861 - 1804099 | 46483.8 |
| undecaprenyl-diphosphate phosphatase | YDC107_RS08935 | Not Available | Negative | 1804180 - 1805001 | 29774.7 |
| bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | YDC107_RS08940 | Not Available | Negative | 1805092 - 1805460 | 13620.2 |
| glycerol-3-phosphate 1-o-acyltransferase plsy | YDC107_RS08945 | Not Available | Positive | 1805565 - 1806182 | 22194.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





