Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Tail fiber protein | YDC107_RS28290 | Not Available | Positive | 12286 - 13322 | 36889.9 |
| Hypothetical protein | YDC107_RS00095 | Not Available | Positive | 13365 - 13652 | 10838.3 |
| Attl | Not Available | Not Available | Positive | 13504 - 13516 | Not Available |
| Parb | YDC107_RS00100 | Not Available | Negative | 13688 - 14687 | 36538.2 |
| Plasmid partition protein sopa | YDC107_RS00105 | Not Available | Negative | 14684 - 15853 | 43774.5 |
| Plasmid partition protein sopa | YDC107_RS00110 | Not Available | Positive | 16767 - 17936 | 43774.5 |
| Parb | YDC107_RS00115 | Not Available | Positive | 17933 - 18922 | 36643.8 |
| Hypothetical protein | YDC107_RS00120 | Not Available | Negative | 18971 - 19258 | 10838.3 |
| Tail fiber protein | YDC107_RS00125 | Not Available | Negative | 19301 - 20341 | 38053.5 |
| Hypothetical protein | YDC107_RS00130 | Not Available | Negative | 20351 - 20632 | 10708.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





