Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase iv subunit b | YDC107_RS08805 | Not Available | Negative | 1775811 - 1777703 | 70347.0 |
| esterase yqia | YDC107_RS08810 | Not Available | Negative | 1777732 - 1778313 | 21642.7 |
| 3',5'-cyclic-amp phosphodiesterase | YDC107_RS08815 | Not Available | Negative | 1778313 - 1779140 | 30951.7 |
| duf1249 family protein | YDC107_RS08820 | Not Available | Negative | 1779165 - 1779587 | 16549.0 |
| adp-ribose diphosphatase | YDC107_RS08825 | Not Available | Negative | 1779588 - 1780217 | 23668.2 |
| outer membrane channel protein tolc | YDC107_RS08830 | Not Available | Positive | 1780422 - 1781903 | 53743.7 |
| duf1190 family protein | YDC107_RS08835 | Not Available | Positive | 1782051 - 1782722 | 23480.7 |
| glutathionylspermidine synthase family protein | YDC107_RS08840 | Not Available | Positive | 1782728 - 1783888 | 45028.4 |
| 4,5-dopa dioxygenase extradiol | YDC107_RS08845 | Not Available | Negative | 1783926 - 1784714 | 28893.7 |
| zinc transporter zupt | YDC107_RS08850 | Not Available | Positive | 1784857 - 1785630 | 26486.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





