Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | YDC107_RS08755 | Not Available | Negative | 1768418 - 1770025 | 60697.1 |
| type ii toxin-antitoxin system antitoxin mqsa | YDC107_RS08760 | Not Available | Negative | 1770158 - 1770553 | 14703.9 |
| type ii toxin-antitoxin system toxin mqsr | YDC107_RS08765 | Not Available | Negative | 1770555 - 1770851 | 11232.6 |
| arac family transcriptional regulator | YDC107_RS08770 | Not Available | Negative | 1771056 - 1771538 | 17828.2 |
| ob fold stress tolerance protein ygiw | YDC107_RS08775 | Not Available | Negative | 1771591 - 1771983 | 14011.5 |
| quorum sensing response regulator transcription factor qseb | YDC107_RS08780 | Not Available | Positive | 1772135 - 1772794 | 24689.2 |
| quorum sensing histidine kinase qsec | YDC107_RS08785 | Not Available | Positive | 1772791 - 1774140 | 50284.7 |
| duf2645 family protein | YDC107_RS08790 | Not Available | Negative | 1774186 - 1774518 | 13201.7 |
| s49 family peptidase | YDC107_RS28370 | Not Available | Positive | 1774837 - 1775418 | 21763.9 |
| putative quinol monooxygenase | YDC107_RS08800 | Not Available | Positive | 1775449 - 1775763 | 11533.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





