Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deda family general envelope maintenance protein yghb | YDC107_RS08705 | Not Available | Positive | 1755870 - 1756529 | 24135.3 |
| dna-binding transcriptional regulator yqhc | YDC107_RS08710 | Not Available | Negative | 1756569 - 1757468 | 33817.1 |
| alcohol dehydrogenase | YDC107_RS08715 | Not Available | Positive | 1757662 - 1758825 | 42099.4 |
| 2,5-didehydrogluconate reductase dkga | YDC107_RS08720 | Not Available | Positive | 1758930 - 1759757 | 31139.4 |
| ybjp/yqhg family protein | YDC107_RS08725 | Not Available | Positive | 1759957 - 1760883 | 34985.0 |
| lipoprotein yqhh | YDC107_RS08730 | Not Available | Positive | 1760934 - 1761191 | 9513.58 |
| ygiq family radical sam protein | YDC107_RS08735 | Not Available | Negative | 1761234 - 1763453 | 83482.5 |
| cell division protein ftsp | YDC107_RS08740 | Not Available | Negative | 1763564 - 1764976 | 51877.2 |
| 1-acylglycerol-3-phosphate o-acyltransferase | YDC107_RS08745 | Not Available | Negative | 1765051 - 1765788 | 27454.8 |
| dna topoisomerase iv subunit a | YDC107_RS08750 | Not Available | Negative | 1766022 - 1768280 | 83862.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





