Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent epimerase/dehydratase family protein | YDC107_RS08555 | Not Available | Positive | 1727356 - 1728270 | 33620.3 |
| acyl carrier protein | YDC107_RS08560 | Not Available | Positive | 1728302 - 1728550 | 9403.62 |
| serine palmitoyltransferase | YDC107_RS08565 | Not Available | Positive | 1728550 - 1729722 | 41885.2 |
| lps export abc transporter permease lptg | YDC107_RS08570 | Not Available | Negative | 1729757 - 1730836 | 39805.5 |
| lps export abc transporter permease lptf | YDC107_RS08575 | Not Available | Negative | 1730833 - 1731903 | 39852.2 |
| ytfj family protein | YDC107_RS08580 | Not Available | Negative | 1731934 - 1732494 | 20746.1 |
| hypothetical protein | YDC107_RS08585 | Not Available | Negative | 1732494 - 1733330 | 32699.5 |
| lipopolysaccharide biosynthesis protein | YDC107_RS08590 | Not Available | Negative | 1733330 - 1734679 | 48726.1 |
| hypothetical protein | YDC107_RS08595 | Not Available | Negative | 1734725 - 1735483 | 28164.2 |
| dtmp kinase | YDC107_RS08600 | Not Available | Negative | 1735515 - 1736228 | 26430.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





