Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s49 family peptidase | YDC107_RS08505 | Not Available | Negative | 1713194 - 1714540 | 50998.6 |
| glycolate permease glca | YDC107_RS08510 | Not Available | Negative | 1714676 - 1716358 | 58923.7 |
| malate synthase g | YDC107_RS08515 | Not Available | Negative | 1716713 - 1718884 | 80486.2 |
| glcg family protein | YDC107_RS08520 | Not Available | Negative | 1718906 - 1719310 | 13737.5 |
| glycolate oxidase subunit glcf | YDC107_RS08525 | Not Available | Negative | 1719315 - 1720538 | 45169.9 |
| glycolate oxidase subunit glce | YDC107_RS08530 | Not Available | Negative | 1720549 - 1721601 | 38329.2 |
| glycolate oxidase subunit glcd | YDC107_RS08535 | Not Available | Negative | 1721601 - 1723100 | 53814.9 |
| transcriptional regulator glcc | YDC107_RS08540 | Not Available | Positive | 1723351 - 1724115 | 28826.9 |
| protein ygho | YDC107_RS08545 | Not Available | Negative | 1724122 - 1725264 | 43440.7 |
| fatty acyl-amp ligase | YDC107_RS08550 | Not Available | Positive | 1725635 - 1727359 | 63370.8 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





