Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| capsular polysaccharide biosynthesis protein | YDC107_RS08460 | Not Available | Positive | 1699580 - 1701607 | 75593.3 |
| capsule biosynthesis protein | YDC107_RS08465 | Not Available | Positive | 1701642 - 1702871 | 48823.9 |
| s49 family peptidase | YDC107_RS28365 | Not Available | Positive | 1703292 - 1703545 | 9452.16 |
| catb-related o-acetyltransferase | YDC107_RS08470 | Not Available | Negative | 1703733 - 1704479 | 27720.6 |
| had family hydrolase | YDC107_RS08475 | Not Available | Negative | 1704793 - 1708137 | 129558.0 |
| abc transporter atp-binding protein | YDC107_RS08480 | Not Available | Negative | 1708270 - 1708938 | 25169.3 |
| abc transporter permease | YDC107_RS08485 | Not Available | Negative | 1708935 - 1709711 | 29536.4 |
| gspm family type ii secretion system protein yghd | YDC107_RS08490 | Not Available | Negative | 1710885 - 1711421 | 20400.8 |
| s49 family peptidase | YDC107_RS08495 | Not Available | Negative | 1711423 - 1712600 | 43224.2 |
| s49 family peptidase | YDC107_RS08500 | Not Available | Negative | 1712597 - 1713013 | 15746.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





