Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| irma family protein | YDC107_RS08350 | Not Available | Positive | 1685236 - 1685691 | 16765.0 |
| is66-like element isec22 family transposase | YDC107_RS08355 | Not Available | Negative | 1685811 - 1687349 | 57461.7 |
| is66 family insertion sequence element accessory protein tnpb | YDC107_RS08360 | Not Available | Negative | 1687398 - 1687745 | 12778.8 |
| is66-like element accessory protein tnpa | YDC107_RS08365 | Not Available | Negative | 1687742 - 1688146 | 15253.5 |
| duf905 family protein | YDC107_RS08370 | Not Available | Positive | 1688232 - 1688465 | 8821.46 |
| duf932 domain-containing protein | YDC107_RS08380 | Not Available | Positive | 1688565 - 1689383 | 31214.5 |
| antirestriction protein | YDC107_RS08385 | Not Available | Positive | 1689438 - 1689923 | 18186.4 |
| jab domain-containing protein | YDC107_RS08390 | Not Available | Positive | 1689939 - 1690415 | 17662.4 |
| duf987 domain-containing protein | YDC107_RS08395 | Not Available | Positive | 1690478 - 1690699 | 8409.23 |
| s49 family peptidase | YDC107_RS28000 | Not Available | Positive | 1690718 - 1691362 | 25019.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





