Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative zinc ribbon protein | YDC107_RS08280 | Not Available | Negative | 1671668 - 1672051 | 14843.3 |
| inovirus gp2 family protein | YDC107_RS08285 | Not Available | Negative | 1672217 - 1672786 | 21687.9 |
| hypothetical protein | YDC107_RS08290 | Not Available | Positive | 1672985 - 1673182 | 7249.25 |
| s49 family peptidase | YDC107_RS08300 | Not Available | Negative | 1673515 - 1673694 | 6957.31 |
| s49 family peptidase | YDC107_RS08310 | Not Available | Positive | 1674626 - 1674831 | 7704.49 |
| hypothetical protein | YDC107_RS08315 | Not Available | Positive | 1674917 - 1675489 | 22292.3 |
| yfji family protein | YDC107_RS08320 | Not Available | Negative | 1675610 - 1677100 | 56195.0 |
| gtpase family protein | YDC107_RS08335 | Not Available | Positive | 1678432 - 1679304 | 32638.0 |
| ag43/cah family autotransporter adhesin | YDC107_RS08340 | Not Available | Positive | 1679676 - 1682522 | 97383.5 |
| hypothetical protein | YDC107_RS08345 | Not Available | Positive | 1682643 - 1685159 | 91375.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





