Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s49 family peptidase | YDC107_RS08230 | Not Available | Negative | 1667093 - 1667287 | 7428.73 |
| transposase | YDC107_RS08235 | Not Available | Positive | 1667372 - 1667806 | 16147.5 |
| is66 family insertion sequence element accessory protein tnpb | YDC107_RS08240 | Not Available | Positive | 1667803 - 1668153 | 13190.1 |
| s49 family peptidase | YDC107_RS08245 | Not Available | Positive | 1668184 - 1668666 | 19073.6 |
| is66-like element accessory protein tnpa | YDC107_RS08250 | Not Available | Positive | 1668753 - 1669178 | 15906.0 |
| s49 family peptidase | YDC107_RS08255 | Not Available | Positive | 1669175 - 1669258 | 3036.75 |
| is3 family transposase | YDC107_RS08260 | Not Available | Positive | 1669315 - 1670528 | 46124.9 |
| s49 family peptidase | YDC107_RS08265 | Not Available | Negative | 1670572 - 1671198 | 23837.7 |
| s49 family peptidase | YDC107_RS08270 | Not Available | Positive | 1671259 - 1671447 | 6981.38 |
| s49 family peptidase | YDC107_RS08275 | Not Available | Negative | 1671486 - 1671671 | 6828.15 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





