Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2884 domain-containing protein | YDC107_RS07905 | Not Available | Negative | 1611062 - 1611781 | 26430.8 |
| yggl family protein | YDC107_RS07910 | Not Available | Negative | 1611965 - 1612291 | 12823.2 |
| trna (guanosine(46)-n7)-methyltransferase trmb | YDC107_RS07915 | Not Available | Negative | 1612291 - 1613010 | 27308.9 |
| a/g-specific adenine glycosylase | YDC107_RS07920 | Not Available | Positive | 1613171 - 1614223 | 39152.3 |
| oxidative damage protection protein | YDC107_RS07925 | Not Available | Positive | 1614251 - 1614526 | 10953.2 |
| membrane-bound lytic murein transglycosylase mltc | YDC107_RS07930 | Not Available | Positive | 1614590 - 1615669 | 40114.8 |
| nucleoside permease nupg | YDC107_RS07935 | Not Available | Positive | 1615871 - 1617127 | 46358.0 |
| ornithine decarboxylase | YDC107_RS07940 | Not Available | Negative | 1617173 - 1619308 | 79507.7 |
| protein yqgh | YDC107_RS27990 | Not Available | Negative | 1619470 - 1619553 | 3188.1 |
| duf554 domain-containing protein | YDC107_RS07945 | Not Available | Positive | 1619706 - 1620413 | 24645.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





