Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf167 family protein yggu | YDC107_RS07855 | Not Available | Positive | 1602432 - 1602722 | 10429.8 |
| xtp/ditp diphosphatase | YDC107_RS07860 | Not Available | Positive | 1602730 - 1603323 | 20997.9 |
| radical sam family heme chaperone hemw | YDC107_RS07865 | Not Available | Positive | 1603316 - 1604452 | 42548.5 |
| trap transporter substrate-binding protein | YDC107_RS07870 | Not Available | Positive | 1604765 - 1605751 | 36500.9 |
| trap transporter small permease | YDC107_RS07875 | Not Available | Positive | 1605796 - 1606299 | 18334.3 |
| trap transporter large permease | YDC107_RS07880 | Not Available | Positive | 1606299 - 1607600 | 45756.4 |
| s49 family peptidase | YDC107_RS07885 | Not Available | Negative | 1607656 - 1607910 | 10115.2 |
| is5-like element isec35 family transposase | YDC107_RS07890 | Not Available | Positive | 1607988 - 1608905 | 34337.8 |
| s49 family peptidase | YDC107_RS07895 | Not Available | Negative | 1608962 - 1609723 | 28725.7 |
| l-asparaginase 2 | YDC107_RS07900 | Not Available | Negative | 1609840 - 1610886 | 36778.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





