Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arginine exporter argo | YDC107_RS07720 | Not Available | Negative | 1574222 - 1574857 | 23177.1 |
| small-conductance mechanosensitive channel mscs | YDC107_RS07725 | Not Available | Negative | 1574996 - 1575856 | 30897.9 |
| s49 family peptidase | YDC107_RS28640 | Not Available | Positive | 1576052 - 1576150 | 3368.14 |
| class ii fructose-bisphosphate aldolase | YDC107_RS07730 | Not Available | Negative | 1576214 - 1577293 | 39149.4 |
| phosphoglycerate kinase | YDC107_RS07735 | Not Available | Negative | 1577508 - 1578671 | 41120.5 |
| erythrose-4-phosphate dehydrogenase | YDC107_RS07740 | Not Available | Negative | 1578721 - 1579740 | 37301.5 |
| nucleoside/nucleotide kinase family protein | YDC107_RS07745 | Not Available | Negative | 1580025 - 1580738 | 27133.4 |
| fumarase e | YDC107_RS07750 | Not Available | Negative | 1580735 - 1581244 | 19272.9 |
| class ii fructose-bisphosphatase | YDC107_RS07755 | Not Available | Negative | 1581266 - 1582231 | 34325.5 |
| zinc-binding dehydrogenase | YDC107_RS07760 | Not Available | Negative | 1582228 - 1583505 | 45820.2 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





