Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoglycerate dehydrogenase | YDC107_RS07670 | Not Available | Negative | 1563227 - 1564459 | 44178.4 |
| ribose-5-phosphate isomerase rpia | YDC107_RS07675 | Not Available | Negative | 1564715 - 1565374 | 22861.8 |
| hypothetical protein | YDC107_RS07680 | Not Available | Negative | 1565430 - 1565660 | 8390.57 |
| dna-binding transcriptional regulator argp | YDC107_RS07685 | Not Available | Positive | 1565802 - 1566695 | 33473.6 |
| methylmalonyl-coa mutase | YDC107_RS07690 | Not Available | Positive | 1566899 - 1569043 | 77875.6 |
| methylmalonyl co-a mutase-associated gtpase meab | YDC107_RS07695 | Not Available | Positive | 1569036 - 1570031 | 36706.1 |
| methylmalonyl-coa decarboxylase | YDC107_RS07700 | Not Available | Positive | 1570042 - 1570827 | 29174.3 |
| propionyl-coa:succinate coa transferase | YDC107_RS07705 | Not Available | Positive | 1570851 - 1572329 | 53827.6 |
| lysr family transcriptional regulator srsr | YDC107_RS07710 | Not Available | Negative | 1572326 - 1573222 | 34675.7 |
| oxidative stress defense protein | YDC107_RS07715 | Not Available | Negative | 1573389 - 1574129 | 26636.7 |
Pathways
867 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





