Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| molybdenum cofactor cytidylyltransferase | YDC107_RS07470 | Not Available | Positive | 1521172 - 1521750 | 21552.3 |
| putative selenate reductase subunit ygfk | YDC107_RS07475 | Not Available | Positive | 1522072 - 1525170 | 115637.0 |
| putative aminohydrolase ssna | YDC107_RS07480 | Not Available | Positive | 1525173 - 1526501 | 48798.2 |
| molybdopterin-dependent oxidoreductase fad-binding subunit | YDC107_RS07485 | Not Available | Positive | 1526552 - 1527331 | 28651.3 |
| molybdopterin-dependent oxidoreductase mo/fe-s-binding subunit | YDC107_RS07490 | Not Available | Positive | 1527328 - 1530198 | 103569.0 |
| xanthine/proton symporter xanq | YDC107_RS07495 | Not Available | Positive | 1530363 - 1531763 | 49169.5 |
| guanine deaminase | YDC107_RS07500 | Not Available | Positive | 1531781 - 1533097 | 50158.9 |
| guanine/hypoxanthine transporter ghxq | YDC107_RS07505 | Not Available | Positive | 1533133 - 1534500 | 46750.9 |
| 4fe-4s dicluster domain-containing protein | YDC107_RS07510 | Not Available | Negative | 1534536 - 1535024 | 17500.4 |
| formate-dependent uric acid utilization protein ygft | YDC107_RS07515 | Not Available | Negative | 1535024 - 1536943 | 69320.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





